Teaser
Fast personalized benchmarks and optimization for NGS read mapping.
Start a mapper benchmark now View Example Report Wiki and Download
Find
...a suitable mapper for your next-gen sequencing data in minutes
Identify
...the right mapping quality thresholds for filtering
Optimize
...mapper parameters for accuracy or throughput
Compare
...simulation and real data results
Summary
Teaser analyzes the performance of read mappers based on a data set provided by you. After you enter key characteristics such as read length and reference genome, Teaser will simulate read data including the gold standard alignment. After the simulation, Teaser automatically runs and evaluates each mapper for the selected parameters and summarizes the results in a report. Teaser also supports benchmarking mappers on real data or custom simulations, as well as testing new mappers and custom parameter sets. You can start using Teaser right now using this web application, or download and install it to unlock all advanced features.
If you use Teaser to optimize read mapping in your study, please cite: Smolka M, Rescheneder P, Schatz MC, von Haeseler A and Sedlazeck FJ. Teaser: Individualized benchmarking and optimization of read mapping results for NGS data. Genome Biology 2015, 16:235 (22 October 2015). DOI: 10.1186/s13059-015-0803-1
If you use Teaser to optimize read mapping in your study, please cite: Smolka M, Rescheneder P, Schatz MC, von Haeseler A and Sedlazeck FJ. Teaser: Individualized benchmarking and optimization of read mapping results for NGS data. Genome Biology 2015, 16:235 (22 October 2015). DOI: 10.1186/s13059-015-0803-1
Recent Publications that cite Teaser
- Therkildsen, Nina Overgaard, and Stephen R. Palumbi. "Practical lowcoverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species." Molecular ecology resources 17.2 (2017): 194-208.
- Dennenmoser, Stefan, et al. "Adaptive genomic divergence under high gene flow between freshwater and brackishwater ecotypes of prickly sculpin (Cottus asper) revealed by PoolSeq." Molecular ecology 26.1 (2017): 25-42.
- Vurture, Gregory W., et al. "GenomeScope: Fast reference-free genome profiling from short reads." Bioinformatics (2017): btx153.
- Guzman, Carlos, and Ivan D'Orso. "CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element prediction." BMC bioinformatics 18.1 (2017): 363.
- Pfeifer, S. P. "From next-generation resequencing reads to a high-quality variant data set." Heredity (2016).
- Brinda, Karel. Novel computational techniques for mapping and classifying Next-Generation Sequencing data. Diss. Universite Paris-Est Marne-la-Valle, 2016.
Update News
New Teaser Version 01/09/2016
Teaser 1.2 is now available and includes various features such as updated visualization, configuration for the segemehl, CUSHAW3, Stampy and Bowtie mappers and improvements in read simulation.Teaser Published10/22/2015
We are happy to announce the publication of Teaser in Genome Biology! Link to ArticlePublic Version Available 08/12/2015
Version 1.0f of the Teaser framework is now available for public use on the CIBIV servers.Recent Benchmarks
Teaser Accession | Organism | Date | Platform | Library | Read Length |
---|---|---|---|---|---|
c24758ff41802b3c46b949f002136c81 | Arabidopsis_thaliana | 2022-06-21 19:19:43 | illumina | paired-end | 150 |
b9f87b352d8bb02c1a77da27fd5989da | M_musculus | 2022-06-03 11:06:53 | illumina | paired-end | 150 |
ca2115b20e98c843b6be6549f1efa55c | D_melanogaster | 2022-05-17 15:59:04 | 454 | single-end | 60 |
bd6f688e5012098f6437f441b249b178 | H_sapiens | 2022-05-10 22:36:48 | illumina | single-end | 23 |
710e153b3b2b861eca57b1a1d45c5386 | D_melanogaster | 2022-02-22 18:30:57 | 454 | single-end | 60 |
c4727dd7c9b3e375f810a2c3f0c68708 | H_sapiens | 2022-02-22 14:22:40 | illumina | paired-end | 60 |
e2cd54aea6a2b6d3081db92958097e4a | H_sapiens | 2022-02-12 20:26:14 | illumina | paired-end | 150 |
cc2bc5310faf14e4b5506b461afb7ba4 | D_melanogaster | 2022-02-01 10:37:12 | illumina | single-end | 150 |
b2fba3b2865cd964ce20ca35297690ae | D_melanogaster | 2022-01-02 13:22:55 | 454 | single-end | 60 |
aa41497ea7e4b6b788d398ac86114f4e | D_melanogaster | 2022-01-02 08:58:52 | 454 | single-end | 60 |
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