Tests Overview

Use the links in the list below to view results for an individual data set, or navigate this page to compare mapper performance across all data sets.

0 tests executed, 0 fail, 0 aborted, 0 errors total.
StateNameReferenceExecutedOKWarningsErrors
Errors and Warnings
TypeMessage
This benchmark contains no tests. This could be because no tests or mappers were selected, or because generation/loading failed for all tests.
Teaser: Test creation failed for 'a884420756f5eb1cfc81ce6826053e81': Return value != 0 for: /project/teaser/genometeaser/software/mason illumina --read-name-prefix read --sq -n 125 -N 119667 --mp --ll 400 --le 50 --hi 0.150000 --hs 0.350000 --hm 1 --hM 4 --source-no-N /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas.sampled.4.4500.900.fasta
Results: Correctly Mapped Reads
Results: Correct/s
Results: Precision
Results: Recall
Results: F-Measure
Raw Results
Setup

This section contains information about the benchmarking process itself and can be shared in order to reproduce results and diagnose problems.

Teaser Accessiona884420756f5eb1cfc81ce6826053e81
Report timestampTue Jan 16 18:05:02 2018
Framework Version1.2-public-vevev
Framework Working Directory/project/teaser/genometeaser/tests_generated/a884420756f5eb1cfc81ce6826053e81
Framework Command Line./teaser.py setups_generated/a884420756f5eb1cfc81ce6826053e81.yaml -mcpu
Benchmark Configuration
evaluation: {pos_threshold: 62}
include: [base_teaser.yaml]
meta_timestamp: 1512565767.852783
report: {name: a884420756f5eb1cfc81ce6826053e81}
sub_max_memory: 14000
sub_max_runtime: 900
teaser:
  tests:
    a884420756f5eb1cfc81ce6826053e81: {coverage: 1.0, error_rate_mult: 1.0, insert_size: 400,
      insert_size_error: 50, mutation_indel_avg_len: 1.0, mutation_indel_frac: 0.3,
      mutation_rate: 0.5, paired: true, platform: !!python/unicode 'illumina', read_length: 125,
      reference: !!python/unicode 'Arabidopsis_thaliana.fas', title: !!python/unicode 'Arabidopsis_thaliana',
      type: !!python/unicode 'simulated_teaser'}
test_mappers: [bwamem, ngm]
test_parameters: []
threads: 4
Log
[14:09:29] [Main        ] framework cmd:  ./teaser.py setups_generated/a884420756f5eb1cfc81ce6826053e81.yaml -mcpu
[14:09:29] [Main        ] framework hash: vevev
[14:09:29] [Main        ] deployment mode: devel (True)
[14:09:29] [Main        ] Test Runner Setup - ""

[14:09:30] [Main        ] Using Teaser for data set creation
[14:09:30] [Teaser      ] Init. Creating 1 test datasets.
[14:09:30] [Teaser      ] 
[14:09:30] [Teaser      ] Creating test a884420756f5eb1cfc81ce6826053e81
[14:09:30] [Teaser      ] change directory /project/teaser/genometeaser/tests_generated/a884420756f5eb1cfc81ce6826053e81
[14:09:30] [Teaser      ] change directory /project/teaser/genometeaser/tests_generated/a884420756f5eb1cfc81ce6826053e81
[14:09:30] [Teaser      ] Loaded index from /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas.teaser.findex
[14:09:30] [Teaser      ] csample /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas 4500 0.250000
[14:09:30] [Teaser      ] Loaded index from /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas.teaser.findex
[14:09:30] [Teaser      ] Sampling as contig: 6648 regions of size 4500 (pad 900), totalling 29916937 base pairs
[14:09:30] [Teaser      ] Sampling 6648 regions
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[14:09:48] [Teaser      ] change directory /project/teaser/genometeaser/tests_generated/a884420756f5eb1cfc81ce6826053e81
[14:09:48] [Teaser      ] 	Simulator cmd: /project/teaser/genometeaser/software/mason illumina --read-name-prefix read --sq -n 125 -N 119667 --mp  --ll 400 --le 50  --hi 0.150000  --hs 0.350000  --hm 1 --hM 4 --source-no-N  /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas.sampled.4.4500.900.fasta
[14:09:48] [Teaser      ] subprogram /project/teaser/genometeaser/software/mason illumina --read-name-prefix read --sq -n 125 -N 119667 --mp  --ll 400 --le 50  --hi 0.150000  --hs 0.350000  --hm 1 --hM 4 --source-no-N  /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas.sampled.4.4500.900.fasta
[18:05:01] [Teaser      ] Return value != 0 for: /project/teaser/genometeaser/software/mason illumina --read-name-prefix read --sq -n 125 -N 119667 --mp  --ll 400 --le 50  --hi 0.150000  --hs 0.350000  --hm 1 --hM 4 --source-no-N  /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas.sampled.4.4500.900.fasta
[18:05:01] [Teaser      ] Teaser: Test creation failed for 'a884420756f5eb1cfc81ce6826053e81': Return value != 0 for: /project/teaser/genometeaser/software/mason illumina --read-name-prefix read --sq -n 125 -N 119667 --mp  --ll 400 --le 50  --hi 0.150000  --hs 0.350000  --hm 1 --hM 4 --source-no-N  /project/teaser/genometeaser/references/Arabidopsis_thaliana.fas.sampled.4.4500.900.fasta
[18:05:01] [ReportGen   ] This benchmark contains no tests. This could be because no tests or mappers were selected, or because generation/loading failed for all tests.